I believe things are really looking up for SFSU as far as PhD preparation is concerned, their students seem to be doing very well:
http://sfsuphil.blogspot.com/2012/01/philosophy-phd-acceptances-2012_30.html
Yes, it may be true that CS programs will be large and generally underfunded, however I think SFSU has set themselves up for some much needed improvement - and I think the next few years may prove this as well. We will see.