Misplaced transcripts seem to be a fairly common issue. I had this happen with my Stanford application. However, Stanford was more understanding. The person I talked to said it was alright since I uploaded a digital unofficial copy as well.
I can also relate to the limbo feeling you described! Having graduated from undergrad in December, I now have too much time on my hands. I was already obsessively checking my email. But when I found this site a few days ago, I began obsessively checking the grad results page too. It just doubles my anxiety!