I finished my MA in poli sci at a masters institution, and applied broadly to doctoral programs. I was accepted into two top-30 departments, but accepted placement at a much lower ranked program due to a multi-year fellowship offer.
I am now one year into the program here, and I want out. This school does not place its candidates well, and the only two faculty members who do work in either my substantive or methodological areas are leaving the department. I have a completed a dissertation prospectus under the advice of one of these two, but because he no longer holds a faculty appointment in the department, I am left with no suitable candidates for chair, or even for readers.
I plan to apply to the same two programs that accepted me for 2011 admission, as well as several others. Will the fact that I chose to accept an offer from a school that is so poorly regarded be counted against me? Do top departments generally reject applicants who have done post-MA work? If not, will these schools be looking for letters from my MA institution (where I conducted research with professors and wrote and defended my thesis) or from my current Ph.D. program (where I have only taken classes).
I appreciate any advice you may be able to provide.