First of all, i would like to thank you for the reply.
I personally want to start working after I graduate. But I have heard a lot about how just having a BS in BENG will not get you any jobs, especially in this economy. Only reason i am willing to do masters is to increase my chances of getting a job in industry. I don't think I would like to go for a PHD though.
Like you mentioned I should look into schools according to my interest in a particular area and then apply to it. I thought that was mostly for PHD programs and since I want to go into industry, I just do a Masters with non-thesis and that will help/increase my chances of getting jobs in the bioengineering industry. Please let me know if this is not how it works.
If I want to do a masters with non-thesis, how important is the school that I attend? Would you recommend me doing a masters with non-thesis or MEng?