Yeah, they should really have an option to enter one's Master's GPA on the results page. It also doesn't help things that many of the GRE verbal and quantitative scores are reversed on the results page, because for some strange reason the entry form asks for the Q score first, and people are just used to entering their V score first.
Finally heard back from a program! I got a call from Prof. Dougherty at Baylor, who invited me for a campus visit in a couple of weeks. Apparently they're flying out their top 10 applicants.
Well, thanks. Personally, I don't think my stats are that amazing, and I should mention that my BA and first master's are from an unknown state school (my second master's is from Duke -- but it's in theology, so that won't mean anything to some programs). So, I tried to have a good mix of first- and second-tier schools. Geography is also an important factor for me.