I overlap with you on three schools--maybe not programs, since you have "studies" listed. One of those contacted me to remind me to apply for the FLAS and two were silent on the matter, but I had already completed the FLAS applications for all three of my own accord. In any case, I doubt I will win any FLAS awards because I was honest and listed "higher education" as my career goal.
Contacting the departments, hmm. I pretty much stopped once I submitted my applications, since it's not considered very good form to press things after that. Unfortunately, left things in a bit of an awkward spot with a professor from at least one school; I hope he'll understand, but my chances at getting in there probably weren't very good anyway.
I finished the JLPTs a while back (went 3 for 3, but haven't taken the new format). I find the kanji kentei tests to be more challenging, if also more esoteric. Studying kanji is a good way to clear my mind.