Were you accepted to Harvard's Regional Studies East Asian (RSEA) program? If so, even if you didn't get funding for the first year, you can still compete for it for your second year. Moreover, a number of people who have the RSEA AM degree often enter a doctoral program at Harvard or other prestigious institutions.
Anyways, University of Washington-Seattle is also an excellent school for East Asian Studies. In fact a couple of the tenured faculty in the East Asian Languages & Civilizations program at Harvard received their doctoral degrees from Seattle.
May I ask what your fields of interest are? Modern Japanese history? Literature? Pre-modern?