This might sound crazy, but disregard those rankings! There isn't an online list of the top programs.
Student Affairs is a very tight-knit field, and you'll go farther based off your experiences and networking, more so than the rankings from a company where schools can "buy" their way into top slots (looking at US News Rankings).
From my research, the better schools for a master in Student Affairs or Higher Education include: University of Maryland - College Park, University of Vermont, Michigan State University, Bowling Green, Colorado State University, UCONN, and Indiana or The Ohio State (one of those red ones, I can't remember which). That's in no specific order - but your own list will develop its own order after you talk with the program and current grads.
Good luck!