Hi Sangi -
A new up-and-coming program is a joint PhD at the University of Notre Dame in Anthropology and Peace Studies. I'm currently in the program and love it (looking at intersections of gender, violence, truth-telling and reconciliation very broadly). The Anthro department at Notre Dame has a handful of folks working on issues of violence - and some specifically on gender and violence (Carolyn Nordstrom, Cynthia Mahmood) - both who have worked in South Asia and Southeast Asia. Here is a link to just Anthro: http://anthropology.nd.edu/
and to the joint PhD: http://kroc.nd.edu/
you can apply to both