As of 12/23:
Applications out: MIT EECS, Stanford BMI, UCSF BMI, Penn GCB, Harvard SSQB, Tri-I CBM, UCLA Genetics and Genomics Track, MSSM Biomed Sci, and Emory PBEE
Interview Invites Received: UCLA (12/9), UCSF (12/12), Stanford (12/16), Penn (12/21), and Emory (12/22)
From what I've gathered, it seems like I'm probably out on Harvard, but I'm not sure w/r/t Tri-I, MSSM (invites probably come out January), and MIT (app deadline was 12/15 and it's a huge program. EECS dept calendar has "Grad Admissions Round Up" scheduled for 1/18-1/24).